TIFR
Department of Chemical Sciences
School of Natural Sciences

Calender

February 18, 2014 at 2.30 pm in AG-69

Title :

Semiconductor Materials for Solar Hydrogen Production Using Water and Abundant Sulfur Compounds

Abstract :

As a clean non-fossil fuel, hydrogen generation by the combination of solar light and semiconductors have drawn great attention as ideal “green” processes for solving global energy and environmental issues. Herein, the recent results of our studies directed to developing semiconducting materials for solar hydrogen production via photodecomposition of water and hydrogen sulfide are presented. Efficient conversion of solar energy to hydrogen via water splitting on photoelectrochemical (PEC) cell is a promising approach. We have developed morphologically modified WO3, doped FeVO4as well as composite CdS/CdSe/ZnS quantum dots decorated titanium dioxide nanotube arrays as photoanode materials, which show significantly improved performances in applications for solar hydrogen generation. The enhancement of photoelectrochemical performances can be attributed to improved electrical conductivities, efficient separation of photoexcited charges and superior charge carrier transport properties of the developed materials. In this talk, hydrogen production from decomposition of H2S using CuAlGaO4as stable and efficient low band gap (1.87 eV) photocatalyst is also presented. Apart from water, H2S which is a toxic gas and produced in large quantities in petroleum refineries has all possibilities for being an alternative source of hydrogen production for both energy and environmental requirements.

 

February 17, 2014 at 4.00 pm in AG-69

Title :

n-pi* Interaction: Too Weak But Can Compete With Strong Hydrogen Bonding Interaction

February 12, 2014 at 2.30 pm in D-406

Title :

The Role of CH and SH Groups as Hydrogen Bond Donors in Stabilizing Molecular Complexes

February 11, 2013 at 2.30 pm in AG-66

Title 

Detecting Reaction Intermediates in Solution and Guiding Cancer Surgery Using Mass Spectrometry

 ABSTRACT

 I wish to describe two recent developments in my laboratory using ambient ionization mass spectrometry, a mass spectrometric technique in which the sample of interest is in open air at room temperature.  The first concerns detection and identification of solution-phase reaction intermediates, the second concerns mass spectrometric imaging.

Palladium complexes catalyze a variety of oxidation reactions, including the Wacker oxidation, the oxidation of alcohols, and oxidative C-C bond-forming reactions.  Simple Pd(II) salts react sluggishly with oxygen, but in the presence of suitable ligands or solvents, Pd complexes are capable of aerobic oxidation reactions.  A key step in these reactions is the oxidation of Pd(0) by O2 to regenerate a Pd(II) intermediate. We have employed a battery of mass spectroscopic techniques such as desorption electrospray ionization mass spectrometry (DESI-MS, millisecond reaction times), electrospray ionization mass spectrometry (ESI-MS, minutes reaction times), and nano-electrospray ionization mass spectrometry (nanospray-MS, minutes reaction times) to search for reaction intermediates formed during the aerobic oxidation of 1,2-diols. By monitoring active reactions with mass spectrometry operating at various timescales, we have directly detected and identified a number of novel intermediates generated in solution during the fast alcohol oxidation and slow aerobic re-oxidation of (neocuproine)Pd(0).  These studies reveal the formation of a novel trinuclear palladium complex, [(neocuproinePd(II))3(m3-O)2]2+.  The identification of this previously unreported species provides new insights on the mechanism of aerobic oxidation mediated by Pd complexes.

Surgical resection is the main curative option for gastrointestinal cancers. The extent of cancer resection is commonly assessed during surgery by pathologic evaluation of (frozen sections) of the tissue at the specimen margin(s). We compare this to an alternative procedure, desorption electrospray ionization mass spectrometric imaging (DESI-MSI), for 62 human cancerous and normal gastric tissue samples. In DESI-MSI, microdroplets strike the tissue sample, the resulting splash enters a mass spectrometer, and a statistical analysis, the Lasso method (multi-class logistic regression with L1 penalty), is applied to classify tissues based on the molecular information obtained directly from DESI-MSI. The results obtained suggest that DESI-MSI/Lasso may be valuable for routinely assessing margins in gastric cancer surgery.

January 31, 2014 at 2.30 pm in AG-80

Title : Understanding the Aggregation Properties of Amyloid Beta Through Solid State NMR and Designed Mutations


Abstract :

Zn+2 can alter the aggregation properties and toxicity of Amyloid beta (Aβ) by selectively precipitating out the soluble oligomers. What does it change? Using Solid State NMR on fibrils Aβ40 grown in the presence of Zn+2, we show that the turn region of the peptide is affected.  We have found that the fibrils of Aβ40 grown in the presence of equal concentration of Zn+2 has a similar hairpin shape but they differs in the turn region. However what we actually need to look at are the biologically active metastable oligomers, (not the fibrils) and focus on the turn region. Using a technique recently developed in the lab for looking at metastable structures, we find that the oligomers are different only in the turn and the terminal regions. This suggests that the conformational change starts at the two hydrophobic arms of the peptide. We are now trying to selectively disturb the stereospecific interaction in the nucleation centre by selective alternation of some amino acids in to their  "dextro" forms, which leaves chemical property of the peptide unchanged.

January 30, 2014 at 2.30 pm in AG-69

Title : to be announced

January 30, 2014 at 11.30 am in NMR Seminar Room

Title : Magic Angle Spinning NMR Studies of M218--60, VDAC, and bR

Astract :

In the last few years magic angle spinning (MAS) NMR has emerged as an important approach to examine the structure and function of membrane proteins. One of the primary advantages is that it enables studies of structure and function in native or quasi-native lipid environments, thus circumventing the perturbing effect of detergents which are often required for solution NMR experiments and crystallography. In addition, it has become possible to enhance the sensitivity of these experiments using dynamic nuclear polarization (DNP) by factors of ~100, thus facilitating more detailed structural studies. In this presentation we discuss the applications of MAS and DNP to three membrane proteins: M2 from influenza-A, the voltage dependent anion channel (VDAC), and bacteriorhodopsin. Studies of M218-60 indicate that this construct, which is fully functional, assembles as a dimer of dimers, rather a tetramer as seen in solution NMR and crystallographic studies. In addition, the amino-admantanyl drugs bind in the pore rather than on the surface. The structure, determined by a variety of dipole recoupling experiments shows that the His and Trp responsible for the H+ conduction are tightly packed M218-60 and that the transfer is likely an intermolecular process. We study VDAC in 2D crystals of DMPC and show that the protein perturbs the lipid gel®liquid crystalline transition, but that the protein does not change conformation dramatically in traversing this transition. We also delineate the structure of the N-terminal tail and show that it is situated in contact with the face of the β-barrel. Finally, we study the structure of photocycle intermediates of bR with DNP enhanced spectra and obtain evidence that bR could be a inward directed OH- pump rather than an outward directed H+ pump.

January 23, 2014 at 2.30 pm in AG-80

Title : Phosphorylation of an uv Inducible Protein (UVI31+) of Chlamydomonas reinhardtii

January 20, 2014, at 2.30 pm in AG69

 Seminar by Mr. Palas Roy

 Title: "Molecular Perspective to Photoinduced Processes in Organic Photovoltaics"

January 13, 2014 at 4.00 pm in AG-69

Title: Fibrils, membranes, crystals, sediments: solid-state NMR of large proteins

Abstract :

Solid-state NMR is an increasingly powerful tool to characterize challenging proteins. Notably, it can analyze an astonishing variety of states, as proteins inserted in membranes, crystals and simple sediments. Combined with other biophysical approaches, solid-state NMR thus gives unique insight into protein structure, and ultimately function. We will illustrate this with some recent examples from our laboratories, including the DnaB helicase from Helicobacter pilori, the BmrA ABC transporter, as well as the yeast prion fibrils Ure2p and Sup35p, for which we will show results related to sample preparation, sequential assignments and structural aspects.

 

January 6, 2014 at 4.00 pm in AG-69

Title : Luminescent Lanthanide Coordinated Probes for Sensing Signaling Phospholipids

December 26, 2013 at 11.30 am in NMR Conference Room

Title : Unraveling the Molecular Mechanism of the Peptide Aggregation by Characterizing the Invisible Intermediates Responsible for Alzheimer and Diabetics Diseases Using NMR Spectroscopy


Abstract :

The mis-folding and the subsequent aggregation of the peptide such as Abeta40 (40 amino acids) and hIAPP (37 amino acids) have been implicated in the pathogenesis of the diseases such as Alzheimer and Diabetics, respectively. Despite, the differences in the manifestation of the diseases, the underlying molecular mechanism of these disease follows a defined pattern. At the outset, the free peptide remains unstructured, but in the due course of time, the peptide oligomerizes into micellar structures, which elongates into long fibrillar structures. The long held belief that the fibrils are solely responsible for the lysis of the bio-membrane and the subsequent cell death, has been thwarted by the recent studies, which suggest that, it is the invisible, lowly populated, intermediate states of the peptides or oligomers, are responsible for the cell death. We used a series of NMR experiments such as CPMG (Carr Purcell Meiboom Gill spin echo)-relaxation dispersion experiment, DEST (Dark/invisible state exchange saturation transfer experiment) and Off-resonance NMR to understand the molecular mechanism of the initial stages of the aggregation of Abeta40 and hIAPP.

 

December 19, 2013 at 2.30 pm in AG-80

Title : Towards Nonlinear Label-Free Imaging of Monoamines in Live Vertebrates

Abstract :

Monoamines are an important class of neurotransmitters that act to transmit signals from one neuron to the next.  They play a significant role in the processing of emotion, reward, sleep-wake cycle and many different behaviors and imbalance of these neurotransmitters believed to be the cause of many neurodegenerative diseases like Parkinson’s, Alzheimer’s, Schizophrenia etc.  Direct imaging of monoamines by single photon excitation has proven to be difficult because their excitation resides in the ultra violet regions.  While some success has been obtained in imaging monoamine neurotransmitters by multi-photon excitation in cells and tissue, the holy grail will be to image it in vivo in live animals.  The present talk will describe our first attempts to use multi-photon label-free imaging to observe monoamine neurotransmitters in live vertebrates (zebra fish) and the corresponding instrumentation.

 

December 17, 2013 at 11.30 am in NMR Conference Room

Title : Protein Crystallography at SPring-8